STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1173Diguanylate cyclase, putative; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (598 aa)    
Predicted Functional Partners:
SPO0327
EAL domain protein; Identified by match to protein family HMM PF00563.
  
 0.926
SPO3037
DNA-binding response regulator, LysR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
 0.849
SPO0533
Diguanylate cyclase, putative.
 
 
 0.819
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.809
SPO0163
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.682
SPO0094
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.660
flgF
Flagellar basal-body rod protein FlgF; Identified by similarity to SP:P23446; match to protein family HMM PF06429.
  
   0.551
SPO1172
FMN-dependent alpha-hydroxy acid dehydrogenase family protein; Identified by match to protein family HMM PF01070.
       0.517
SPO1174
DNA helicase II, putative; Identified by match to protein family HMM PF00580.
     
 0.513
SPO3410
Anti-sigma B factor, putative; Identified by similarity to SP:P17904; match to protein family HMM PF02518.
   
 
 0.508
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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