Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1177Hypothetical protein; Identified by similarity to GB:BAB50586.1; match to protein family HMM PF06568. (74 aa)    
Predicted Functional Partners:
SPO0214
Membrane protein, putative.
  
     0.642
SPO1127
Identified by match to protein family HMM PF00034.
  
     0.522
SPO2292
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
  
     0.507
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.502
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.471
SPO2284
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
  
     0.468
SPO2027
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.436
SPO2942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.430
SPO1741
Hypothetical protein; Identified by similarity to GB:CAE29115.1.
  
     0.412
SPO3118
Hypothetical protein; Identified by similarity to GB:CAC46124.1; match to protein family HMM PF06568.
      
 0.409
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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