Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1186TPR domain protein; Identified by similarity to PIR:AG2285; match to protein family HMM PF00515. (374 aa)    
Predicted Functional Partners:
SPO1185
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
 
 0.689
SPO2903
TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.
 
 
 0.663
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
   
 0.657
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
   
 0.657
SPO0621
Ankrin repeat protein.
 
 0.651
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
       0.589
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
    
 0.581
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
    
 0.569
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.559
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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