Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1198Hypothetical protein; Identified by similarity to GB:BAC67841.1. (81 aa)    
Predicted Functional Partners:
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.762
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
  
     0.657
SPO3093
TPR domain protein; Identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515.
  
     0.640
SPO1740
Hypothetical protein; Identified by similarity to PIR:F97376.
  
     0.638
SPO3119
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.625
SPO1741
Hypothetical protein; Identified by similarity to GB:CAE29115.1.
  
     0.594
SPO2027
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.590
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.572
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.560
SPO2738
Lipoprotein, putative.
  
     0.555
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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