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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1198Hypothetical protein; Identified by similarity to GB:BAC67841.1. (81 aa)    
Predicted Functional Partners:
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.762
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
  
     0.657
SPO3093
TPR domain protein; Identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515.
  
     0.640
SPO1740
Hypothetical protein; Identified by similarity to PIR:F97376.
  
     0.638
SPO3119
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.625
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.610
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
       0.598
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
       0.598
SPO1741
Hypothetical protein; Identified by similarity to GB:CAE29115.1.
  
     0.594
SPO1194
Cell division protein FtsW; Identified by similarity to SP:P16457; match to protein family HMM PF01098; Belongs to the SEDS family.
       0.593
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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