STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1209MlrC domain protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family. (482 aa)    
Predicted Functional Partners:
SPO1210
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to SP:P75797; match to protein family HMM PF00496.
 
     0.790
SPO3831
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
     0.639
SPO1215
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM PF01546.
 
     0.536
SPO1208
Voltage-gated chloride channel family protein; Identified by match to protein family HMM PF00654.
       0.480
SPO1212
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
 
     0.446
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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