STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1215Peptidase, M20/M25/M40 family; Identified by match to protein family HMM PF01546. (376 aa)    
Predicted Functional Partners:
SPO1210
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to SP:P75797; match to protein family HMM PF00496.
 
     0.891
SPO1211
Oligopeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
     0.850
SPO1212
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
 
     0.832
SPO1213
Oligopeptide ABC transporter, ATP-binding protein; Substrate assignment partly based on location in oligopeptide ABC transporter gene cluster; identified by similarity to SP:P75796; match to protein family HMM PF00005.
 
     0.806
SPO1214
Hippurate hydrolase; Identified by similarity to PIR:I40762; match to protein family HMM PF01546; match to protein family HMM TIGR01891.
 
     0.806
SPO1209
MlrC domain protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.565
SPO1311
Identified by match to protein family HMM PF01244.
  
  
 0.539
SPO1410
Identified by match to protein family HMM PF01244.
  
  
 0.539
SPO1542
Identified by match to protein family HMM PF01244.
  
  
 0.539
SPO3190
Identified by match to protein family HMM PF01244.
  
  
 0.539
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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