STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1222Site-specific recombinase, resolvase family; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508. (494 aa)    
Predicted Functional Partners:
SPO1224
Hypothetical protein; Identified by similarity to GB:BAB66386.1.
 
    0.852
SPO1230
Hypothetical protein; Identified by similarity to PIR:T31014.
 
     0.703
SPO1225
Hypothetical protein; Identified by similarity to GB:AAQ58890.1.
 
     0.502
SPO2408
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.484
soxV
Sulfur oxidation V protein; Identified by similarity to GB:AAF99429.1; match to protein family HMM PF02683.
  
    0.449
ccdA
Cytochrome c-type biogenesis protein CcdA; Identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683.
  
    0.431
SPO1223
Hypothetical protein; Identified by Glimmer2; putative.
       0.420
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.