STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1225Hypothetical protein; Identified by similarity to GB:AAQ58890.1. (192 aa)    
Predicted Functional Partners:
SPO1224
Hypothetical protein; Identified by similarity to GB:BAB66386.1.
       0.522
SPO1222
Site-specific recombinase, resolvase family; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
 
     0.502
SPO1226
Lipoprotein, putative.
       0.500
SPO1223
Hypothetical protein; Identified by Glimmer2; putative.
       0.494
SPO1226a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG021; not identified in other Roseobacter strains'.
       0.471
SPO1217
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.412
SPO3126
Sigma factor regulator PrtR, putative; Identified by similarity to GB:AAF81073.1.
  
     0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.