Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1230Hypothetical protein; Identified by similarity to PIR:T31014. (768 aa)    
Predicted Functional Partners:
SPO1229
Hypothetical protein; Identified by Glimmer2; putative.
       0.779
SPO3787
Assignment partly based on membership in sugar ABC transporter gene cluster; identified by match to protein family HMM TIGR01409.
  
     0.737
SPO1222
Site-specific recombinase, resolvase family; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
 
     0.703
SPO3351
Aha1 domain protein; Identified by similarity to PIR:G96031; match to protein family HMM PF05146.
 
     0.485
SPO1231
Hypothetical protein; Identified by Glimmer2; putative.
       0.442
SPO2875
Hypothetical protein; Identified by similarity to GB:AAO56638.1.
  
     0.404
SPO1319
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.403
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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