STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1241Hypothetical protein; Identified by similarity to GB:AAK23300.1. (309 aa)    
Predicted Functional Partners:
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.741
SPO1240
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
       0.739
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.714
SPO2513
Hypothetical protein; Identified by similarity to GB:CAE27057.1.
  
     0.705
SPO2773
Lipoprotein, putative.
  
     0.676
SPO0214
Membrane protein, putative.
  
     0.669
SPO2738
Lipoprotein, putative.
  
     0.659
SPO1741
Hypothetical protein; Identified by similarity to GB:CAE29115.1.
  
     0.657
SPO1320
Lipoprotein, putative.
  
     0.652
SPO1740
Hypothetical protein; Identified by similarity to PIR:F97376.
  
     0.650
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.