STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1243Hypothetical protein; Identified by similarity to GB:AAR38391.1. (179 aa)    
Predicted Functional Partners:
SPO0373
Helicase, ATP-dependent, putative.
  
     0.775
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.774
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.774
SPO1097
Hypothetical protein; Identified by similarity to PIR:C98286.
  
     0.766
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.765
SPO0951
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.764
SPO3336
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.758
SPO2239
Hypothetical protein; Identified by similarity to GB:AAN30050.1.
  
     0.753
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.745
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.740
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.