Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SPO1247Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (226 aa)    
Predicted Functional Partners:
SPO3331
Hypothetical protein; Identified by similarity to GB:AAN40802.1; match to protein family HMM PF05143.
   
 0.915
SPO2049
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
   
 0.795
SPO1246
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
       0.662
SPO0539
Membrane protein, putative.
 
   
 0.598
SPO0540
Mercuric reductase, putative; Identified by similarity to SP:P17239.
 
     0.589
SPO2690
Hypothetical protein; Identified by similarity to GB:CAB61860.1.
 
  
 0.562
SPO1245
ABC transporter, permease protein; Identified by match to protein family HMM PF00664.
  
  
 0.536
SPO0525
Sterol desaturase-like protein.
 
 
   0.410
SPO0975
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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