STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1250Lipoprotein, putative; Identified by similarity to GB:AAQ60217.1; match to protein family HMM PF03886. (185 aa)    
Predicted Functional Partners:
SPO1249
Paraquat-inducible protein, putative; Identified by similarity to SP:P43671.
 
   
 0.970
SPO0905
Hypothetical protein; Identified by similarity to PIR:T03518.
  
     0.519
SPO3119
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.440
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
 
     0.436
SPO3279
NUDIX domain protein; Identified by match to protein family HMM PF00293.
 
     0.432
SPO0165
Pyrroline-5-carboxylate reductase, putative.
  
     0.428
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.417
SPO0725
Bacterial SH3 domain family protein.
  
     0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.