| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO1265 | SPO1266 | SPO1265 | SPO1266 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Identified by match to protein family HMM PF03937. | 0.836 |
| SPO1265 | rplR | SPO1265 | SPO0501 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.698 |
| SPO1265 | rplW | SPO1265 | SPO3823 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.721 |
| SPO1265 | rpmC | SPO1265 | SPO0493 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein L29; Identified by similarity to SP:P04457; Belongs to the universal ribosomal protein uL29 family. | 0.729 |
| SPO1265 | rpsC | SPO1265 | SPO0487 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.803 |
| SPO1265 | rpsD | SPO1265 | SPO3181 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.706 |
| SPO1265 | rpsE | SPO1265 | SPO0502 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.685 |
| SPO1265 | rpsM | SPO1265 | SPO0509 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.688 |
| SPO1265 | rpsQ | SPO1265 | SPO0494 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.682 |
| SPO1265 | rpsS | SPO1265 | SPO0485 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.750 |
| SPO1266 | SPO1265 | SPO1266 | SPO1265 | Identified by match to protein family HMM PF03937. | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | 0.836 |
| rplR | SPO1265 | SPO0501 | SPO1265 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | 0.698 |
| rplR | rplW | SPO0501 | SPO3823 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.993 |
| rplR | rpmC | SPO0501 | SPO0493 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L29; Identified by similarity to SP:P04457; Belongs to the universal ribosomal protein uL29 family. | 0.995 |
| rplR | rpsC | SPO0501 | SPO0487 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.992 |
| rplR | rpsD | SPO0501 | SPO3181 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.989 |
| rplR | rpsE | SPO0501 | SPO0502 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.996 |
| rplR | rpsM | SPO0501 | SPO0509 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.995 |
| rplR | rpsQ | SPO0501 | SPO0494 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.996 |
| rplR | rpsS | SPO0501 | SPO0485 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.991 |
