Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO1271Hypothetical protein; Identified by Glimmer2; putative. (467 aa)    
Predicted Functional Partners:
SPO1272
Hypothetical protein; Identified by Glimmer2; putative.
       0.830
thyX
Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
 
     0.683
SPO1269
Hypothetical protein; Identified by similarity to GB:BAB50411.1.
 
     0.680
SPO1270
Lactoylglutathione lyase, putative; Identified by match to protein family HMM PF00903.
  
   0.679
SPO1268
Lipoprotein, putative.
 
     0.674
SPO0570
Hypothetical protein; Identified by similarity to GB:CAD14776.1.
 
 
   0.656
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
   
 0.655
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
   
 0.655
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
   
 0.614
SPO0621
Ankrin repeat protein.
  
 0.600
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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