SPO1275 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO1275

Identified by match to protein family HMM PF00313. (68 aa)

Predicted Functional Partners:

SPO2140

0.623

SPO1276

0.505

rpsL

0.473

rpmE

0.459

rpmJ

0.434

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1275	SPO1276	SPO1275	SPO1276	Identified by match to protein family HMM PF00313.	Identified by match to protein family HMM PF03960; Belongs to the ArsC family.	0.505
SPO1275	SPO2140	SPO1275	SPO2140	Identified by match to protein family HMM PF00313.	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	0.623
SPO1275	rpmE	SPO1275	SPO3256	Identified by match to protein family HMM PF00313.	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.459
SPO1275	rpmJ	SPO1275	SPO3284	Identified by match to protein family HMM PF00313.	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	0.434
SPO1275	rpsL	SPO1275	SPO3501	Identified by match to protein family HMM PF00313.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.473
SPO1276	SPO1275	SPO1276	SPO1275	Identified by match to protein family HMM PF03960; Belongs to the ArsC family.	Identified by match to protein family HMM PF00313.	0.505
SPO2140	SPO1275	SPO2140	SPO1275	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	Identified by match to protein family HMM PF00313.	0.623
SPO2140	rpmE	SPO2140	SPO3256	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.459
SPO2140	rpmJ	SPO2140	SPO3284	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	0.434
SPO2140	rpsL	SPO2140	SPO3501	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.473
rpmE	SPO1275	SPO3256	SPO1275	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	Identified by match to protein family HMM PF00313.	0.459
rpmE	SPO2140	SPO3256	SPO2140	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	0.459
rpmE	rpmJ	SPO3256	SPO3284	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	0.976
rpmE	rpsL	SPO3256	SPO3501	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.972
rpmJ	SPO1275	SPO3284	SPO1275	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Identified by match to protein family HMM PF00313.	0.434
rpmJ	SPO2140	SPO3284	SPO2140	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	0.434
rpmJ	rpmE	SPO3284	SPO3256	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.976
rpmJ	rpsL	SPO3284	SPO3501	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.979
rpsL	SPO1275	SPO3501	SPO1275	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	Identified by match to protein family HMM PF00313.	0.473
rpsL	SPO2140	SPO3501	SPO2140	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	Cold shock DNA-binding domain protein; Identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313.	0.473

page 1 of 2

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About