STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1277Hypothetical protein; Identified by Glimmer2; putative. (122 aa)    
Predicted Functional Partners:
SPO1276
Identified by match to protein family HMM PF03960; Belongs to the ArsC family.
       0.696
SPO3610
Hypothetical protein; Identified by similarity to GB:BAC74958.1.
  
     0.596
SPO1915
Identified by match to protein family HMM PF00903.
  
     0.506
SPO3351
Aha1 domain protein; Identified by similarity to PIR:G96031; match to protein family HMM PF05146.
  
     0.471
SPO3323
Hypothetical protein; Identified by similarity to GB:CAC46974.1.
  
     0.467
SPO3324
Hypothetical protein; Identified by similarity to GB:CAC46975.1.
  
     0.448
SPO3322
Hypothetical protein; Identified by similarity to GB:CAC46971.1.
  
     0.419
SPO3325
Hypothetical protein; Identified by similarity to GB:BAB49806.1.
  
     0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.