Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1278Hypothetical protein; Identified by similarity to GB:AAK25219.1. (187 aa)    
Predicted Functional Partners:
SPO1279
Hypothetical protein; Identified by similarity to GB:CAE43198.1.
 
  
 0.983
SPO1280
Hypothetical protein; Identified by similarity to SP:Q92W37; match to protein family HMM PF05114; Belongs to the UPF0276 family.
 
  
 0.983
SPO1281
Hypothetical protein; Identified by similarity to GB:CAE31790.1.
 
  
 0.953
gidA
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.537
SPO0185
Membrane protein, putative.
  
     0.522
SPO2749
Membrane protein, putative; Identified by similarity to GB:AAQ58806.1.
   
  0.519
SPO3323
Hypothetical protein; Identified by similarity to GB:CAC46974.1.
     
 0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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