STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1280Hypothetical protein; Identified by similarity to SP:Q92W37; match to protein family HMM PF05114; Belongs to the UPF0276 family. (292 aa)    
Predicted Functional Partners:
SPO1279
Hypothetical protein; Identified by similarity to GB:CAE43198.1.
  
 0.999
SPO1281
Hypothetical protein; Identified by similarity to GB:CAE31790.1.
 
  
 0.989
SPO1278
Hypothetical protein; Identified by similarity to GB:AAK25219.1.
 
  
 0.983
SPO1394
Beta-lactamase, putative; Identified by match to protein family HMM PF00144; match to protein family HMM PF00353.
   
    0.812
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
   
    0.728
SPO2749
Membrane protein, putative; Identified by similarity to GB:AAQ58806.1.
   
    0.590
SPO0640
4-carboxymuconolactone decarboxylase domain/ alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.450
SPO3789
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.450
SPO3260
Methyltransferase-like protein; Identified by similarity to GB:AAD44211.1.
  
    0.448
SPO2768
4-carboxymuconolactone decarboxylase, putative; Identified by match to protein family HMM PF02627.
  
  
 0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.