STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1281Hypothetical protein; Identified by similarity to GB:CAE31790.1. (103 aa)    
Predicted Functional Partners:
SPO1280
Hypothetical protein; Identified by similarity to SP:Q92W37; match to protein family HMM PF05114; Belongs to the UPF0276 family.
 
  
 0.988
SPO1279
Hypothetical protein; Identified by similarity to GB:CAE43198.1.
 
  
 0.971
SPO1278
Hypothetical protein; Identified by similarity to GB:AAK25219.1.
 
  
 0.958
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
   
    0.807
SPO1394
Beta-lactamase, putative; Identified by match to protein family HMM PF00144; match to protein family HMM PF00353.
   
    0.807
SPO2749
Membrane protein, putative; Identified by similarity to GB:AAQ58806.1.
  
    0.600
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
       0.532
SPO3409
Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
   
    0.504
SPO3334
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.440
SPO2768
4-carboxymuconolactone decarboxylase, putative; Identified by match to protein family HMM PF02627.
  
    0.429
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.