STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1284Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF05146. (247 aa)    
Predicted Functional Partners:
SPO1283
Hypothetical protein; Identified by similarity to GB:BAC49624.1.
       0.778
SPO1287
Identified by match to protein family HMM PF00903.
     
 0.562
SPO3352
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
  
 0.559
SPO1285
Hypothetical protein; Identified by similarity to GB:CAE25485.1.
     
 0.550
SPO1286
Hypothetical protein; Identified by similarity to GB:BAB47950.1.
       0.539
SPO1288
Hypothetical protein; Identified by similarity to GB:CAC41730.1.
       0.539
SPO3545
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
  
 0.509
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
     
 0.491
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.485
SPO1385
Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.
 
   
 0.484
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.