STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1285Hypothetical protein; Identified by similarity to GB:CAE25485.1. (247 aa)    
Predicted Functional Partners:
SPO1286
Hypothetical protein; Identified by similarity to GB:BAB47950.1.
     
 0.824
SPO1288
Hypothetical protein; Identified by similarity to GB:CAC41730.1.
       0.786
SPO1287
Identified by match to protein family HMM PF00903.
  
    0.774
SPO1289
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
       0.651
SPO0482
NADH-ubiquinone oxidoreductase family protein.
 
     0.609
SPO1284
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF05146.
     
 0.550
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
  
    0.549
SPO1283
Hypothetical protein; Identified by similarity to GB:BAC49624.1.
       0.541
SPO0230
Hypothetical protein; Identified by similarity to GB:AAK25258.1.
 
     0.532
SPO1006
NADH dehydrogenase subunit, putative; Identified by similarity to SP:O97725; match to protein family HMM PF05071.
  
     0.516
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.