STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1286Hypothetical protein; Identified by similarity to GB:BAB47950.1. (330 aa)    
Predicted Functional Partners:
SPO1285
Hypothetical protein; Identified by similarity to GB:CAE25485.1.
     
 0.842
SPO1288
Hypothetical protein; Identified by similarity to GB:CAC41730.1.
       0.784
SPO1287
Identified by match to protein family HMM PF00903.
       0.773
SPO1289
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
     
 0.603
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.579
SPO1283
Hypothetical protein; Identified by similarity to GB:BAC49624.1.
       0.539
SPO1284
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF05146.
       0.539
SPO2612
DNA-binding protein HU, putative.
  
   
 0.443
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.