Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1290Hypothetical protein; Identified by similarity to PIR:D83123. (194 aa)    
Predicted Functional Partners:
phaZ
Polyhydroxyalkanoate depolymerase, intracellular; Identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849.
       0.786
phaC
Poly(3-hydroxyalkanoate) polymerase; Identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838.
       0.543
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
 
     0.447
SPO0019
Membrane protein, putative.
  
     0.435
SPO2290
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'.
  
     0.432
SPO2327
Fatty acid desaturase; Identified by match to protein family HMM PF00487.
 
     0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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