STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaZPolyhydroxyalkanoate depolymerase, intracellular; Identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849. (424 aa)    
Predicted Functional Partners:
phaC
Poly(3-hydroxyalkanoate) polymerase; Identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838.
 
  
 0.990
SPO0112
Identified by match to protein family HMM PF07167.
 
  
 0.968
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
 
   
 0.880
SPO1294
Polyhydroxyalkanoate synthesis repressor PhaR; Identified by match to protein family HMM TIGR01848.
 
   
 0.793
SPO1290
Hypothetical protein; Identified by similarity to PIR:D83123.
       0.786
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
    0.541
phbB
acetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829.
  
   
 0.478
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.434
SPO2984
RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
  
     0.432
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
  
     0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.