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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaCPoly(3-hydroxyalkanoate) polymerase; Identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838. (600 aa)    
Predicted Functional Partners:
phaZ
Polyhydroxyalkanoate depolymerase, intracellular; Identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849.
 
  
 0.993
phbB
acetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829.
 
 0.965
SPO3152
MaoC domain protein; Identified by match to protein family HMM PF01575.
 
 
 0.953
SPO0112
Identified by match to protein family HMM PF07167.
  
  
 
0.916
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
   
 
 0.916
SPO1294
Polyhydroxyalkanoate synthesis repressor PhaR; Identified by match to protein family HMM TIGR01848.
 
   
 0.857
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
 
   
 0.782
SPO0115
maoC family protein/phosphate acetyl/butaryl transferase; Identified by match to protein family HMM PF01515; match to protein family HMM PF01575.
  
 0.725
SPO2064
Phospholipase, patatin-like family; Identified by match to protein family HMM PF01734.
 
   
 0.623
phaA
pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039.
      
 0.620
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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