Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phaPPhasin, PhaP; Identified by similarity to GB:BAA77258.1. (148 aa)    
Predicted Functional Partners:
phaZ
Polyhydroxyalkanoate depolymerase, intracellular; Identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849.
 
   
 0.880
SPO1294
Polyhydroxyalkanoate synthesis repressor PhaR; Identified by match to protein family HMM TIGR01848.
 
   
 0.851
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.773
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
     0.772
SPO0304
Lipoprotein, putative.
  
     0.762
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.761
phaC
Poly(3-hydroxyalkanoate) polymerase; Identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838.
 
   
 0.757
SPO1878
Hypothetical protein; Identified by similarity to GB:AAF26222.1; match to protein family HMM PF05838.
  
     0.757
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.748
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.715
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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