STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1294Polyhydroxyalkanoate synthesis repressor PhaR; Identified by match to protein family HMM TIGR01848. (185 aa)    
Predicted Functional Partners:
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
 
   
 0.938
phaZ
Polyhydroxyalkanoate depolymerase, intracellular; Identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849.
 
   
 0.894
phaC
Poly(3-hydroxyalkanoate) polymerase; Identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838.
 
   
 0.857
SPO0112
Identified by match to protein family HMM PF07167.
 
   
 0.736
mur
Manganese uptake regulator; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
      
 0.721
SPO2064
Phospholipase, patatin-like family; Identified by match to protein family HMM PF01734.
 
   
 0.536
phbB
acetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829.
 
   
 0.481
SPO1105
methylmalonyl-CoA mutase; Identified by similarity to SP:O86028; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
     
 0.462
SPO0932
methylmalonyl-CoA epimerase; Identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903.
      
 0.457
SPO0938
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.445
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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