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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1303Fructosyl-amino acid oxidase, putative; Identified by similarity to GB:BAB91123.1; match to protein family HMM PF01266. (352 aa)    
Predicted Functional Partners:
SPO1304
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; Identified by similarity to SP:P02912; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
       0.773
SPO1305
ABC transporter, permease protein, HisMQ family; Identified by similarity to PIR:T44455; match to protein family HMM PF00528.
       0.773
SPO1746
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 
 0.750
SPO2345
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 
 0.749
SPO1586
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
  
 
 0.717
SPO3387
Hypothetical protein; Identified by similarity to GB:AAK01513.1.
 
     0.574
SPO1306
Polar amino acid transport system substrate-binding protein; Identified by similarity to SP:P35120; similarity to PIR:T44454; match to protein family HMM PF00497.
  
    0.564
SPO1307
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
     
 0.550
SPO1302
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
  
  
 0.538
SPO0544
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
   0.462
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.