STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1305ABC transporter, permease protein, HisMQ family; Identified by similarity to PIR:T44455; match to protein family HMM PF00528. (295 aa)    
Predicted Functional Partners:
SPO1304
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; Identified by similarity to SP:P02912; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
0.978
SPO1306
Polar amino acid transport system substrate-binding protein; Identified by similarity to SP:P35120; similarity to PIR:T44454; match to protein family HMM PF00497.
 
 0.969
SPO1307
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
 
  
 0.966
SPO1303
Fructosyl-amino acid oxidase, putative; Identified by similarity to GB:BAB91123.1; match to protein family HMM PF01266.
       0.773
gltK
Glutamate/aspartate ABC transporter, permease protein; Identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
    0.724
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  
 0.706
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein; Identified by similarity to SP:P41076; match to protein family HMM PF00005.
 
  
 0.694
SPO2664
Polar amino acid uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
  
 0.679
glnQ
Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
  
 0.671
SPO2367
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666; match to protein family HMM PF00005.
 
  
 0.655
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.