Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1307His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; Identified by similarity to SP:P07109; match to protein family HMM PF00005. (258 aa)    
Predicted Functional Partners:
SPO1305
ABC transporter, permease protein, HisMQ family; Identified by similarity to PIR:T44455; match to protein family HMM PF00528.
 
  
 0.966
SPO1304
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; Identified by similarity to SP:P02912; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
 0.959
SPO1306
Polar amino acid transport system substrate-binding protein; Identified by similarity to SP:P35120; similarity to PIR:T44454; match to protein family HMM PF00497.
 
  
 0.951
gltK
Glutamate/aspartate ABC transporter, permease protein; Identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    0.889
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.796
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    0.794
SPO3041
Polar amino acid uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
    0.778
SPO2666
Polar amino acid uptake family ABC transporter, permease protein; Identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
    0.777
SPO2665
Assignment partly based on membership in polar amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
    0.764
SPO3042
Polar amino acid uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
    0.760
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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