STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1308Hypothetical protein; Identified by similarity to PIR:F83007. (250 aa)    
Predicted Functional Partners:
SPO1441
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
 
     0.813
SPO1309
Hypothetical protein; Identified by similarity to GB:CAC47662.1; match to protein family HMM PF07049.
       0.812
SPO1439
DNA binding protein, putative; Identified by match to protein family HMM PF01381.
 
     0.768
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
       0.745
SPO1747
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
  
     0.726
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
  
 0.722
phoC
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
  
  
 0.720
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.661
SPO1307
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
       0.598
SPO1657
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
     0.598
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.