Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1309Hypothetical protein; Identified by similarity to GB:CAC47662.1; match to protein family HMM PF07049. (145 aa)    
Predicted Functional Partners:
SPO1308
Hypothetical protein; Identified by similarity to PIR:F83007.
       0.805
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
 
    
0.713
SPO1310a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG011; similar gene identified in less than 5 other Roseobacter strains'.
       0.576
SPO1307
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
       0.555
SPO1306
Polar amino acid transport system substrate-binding protein; Identified by similarity to SP:P35120; similarity to PIR:T44454; match to protein family HMM PF00497.
       0.528
SPO0335
Hypothetical protein.
 
     0.473
SPO2227
Hypothetical protein; Identified by similarity to GB:BAC49590.1.
  
     0.444
SPO0137
Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226.
  
     0.432
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
  
     0.427
SPO1311
Identified by match to protein family HMM PF01244.
       0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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