STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1311Identified by match to protein family HMM PF01244. (346 aa)    
Predicted Functional Partners:
SPO2837
Hypothetical protein; Identified by similarity to GB:BAB51661.1.
      0.840
comC
(2R)-3-sulfolactate dehydrogenase; Identified by match to protein family HMM PF02615; PMID: 19581363; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.583
SPO1543
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
 
     0.553
SPO1310a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG011; similar gene identified in less than 5 other Roseobacter strains'.
       0.546
SPO1215
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM PF01546.
  
  
 0.539
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
       0.460
SPO1308
Hypothetical protein; Identified by similarity to PIR:F83007.
       0.419
SPO1309
Hypothetical protein; Identified by similarity to GB:CAC47662.1; match to protein family HMM PF07049.
       0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.