STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nthANitrile hydratase subunit alpha; Identified by similarity to SP:P97051; match to protein family HMM PF02979; match to protein family HMM TIGR01323. (204 aa)    
Predicted Functional Partners:
nthB
Nitrile hydratase beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.
 
 
 0.999
SPO1316
Hypothetical protein; Identified by similarity to GB:BAC49761.1.
 
   
 0.969
SPO2583
Identified by match to protein family HMM PF01425.
 
  
  0.919
SPO1489
Indole acetamide hydrolase; Identified by similarity to SP:Q09102.
    
  0.903
SPO2938
Identified by match to protein family HMM PF01425.
    
  0.902
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.545
SPO3418
Identified by match to protein family HMM PF01425; Belongs to the amidase family.
    
  0.518
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
    
  0.513
putA
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
      
 0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.