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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1317Hypothetical protein; Identified by similarity to PIR:H81075. (77 aa)    
Predicted Functional Partners:
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.861
SPO3336
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.761
SPO1931
Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550.
  
     0.750
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.740
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.736
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.732
SPO2517
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
  
     0.708
SPO0373
Helicase, ATP-dependent, putative.
  
     0.695
SPO2522
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.679
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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