Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
SPO1337Membrane protein, putative; Identified by match to protein family HMM PF00892. (300 aa)    
Predicted Functional Partners:
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
     
 0.798
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
  
    0.671
SPO1337a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG023; not identified in other Roseobacter strains'.
       0.664
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.567
SPO1335
Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
       0.535
SPO1321
Thiamine pyrophosphokinase; Identified by match to protein family HMM PF04263.
  
     0.485
SPO2612
DNA-binding protein HU, putative.
  
     0.462
SPO1340
Membrane protein, putative.
       0.451
SPO1342
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.435
SPO0635
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
     0.408
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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