Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO1342Hypothetical protein; Identified by Glimmer2; putative. (130 aa)    
Predicted Functional Partners:
SPO1341
Alkane-1 monooxygenase, putative; Identified by match to protein family HMM PF00487.
       0.687
SPO2107
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
  
     0.615
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
       0.555
SPO3110
tonB domain protein, putative.
  
     0.543
SPO3758
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.541
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.522
SPO1340
Membrane protein, putative.
       0.507
SPO2738
Lipoprotein, putative.
  
     0.498
SPO0021
Hpt domain protein; Identified by match to protein family HMM PF01627.
  
     0.485
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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