Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO1352a | folE2 | SPO1352a | SPO1352 | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG003; not identified in other Roseobacter strains'. | Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate. | 0.453 |
| SPO1352a | trkH-1 | SPO1352a | SPO1353 | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG003; not identified in other Roseobacter strains'. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.608 |
| SPO1424 | phaA | SPO1424 | SPO2893 | Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039. | 0.715 |
| SPO1424 | trkA | SPO1424 | SPO2083 | Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.683 |
| SPO1424 | trkH-1 | SPO1424 | SPO1353 | Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.485 |
| dinF | trkA | SPO2909 | SPO2083 | Identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.414 |
| dinF | trkH-1 | SPO2909 | SPO1353 | Identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.422 |
| folE2 | SPO1352a | SPO1352 | SPO1352a | Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate. | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG003; not identified in other Roseobacter strains'. | 0.453 |
| folE2 | trkH-1 | SPO1352 | SPO1353 | Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.627 |
| ftsE | trkH-1 | SPO0337 | SPO1353 | Cell division ATP-binding protein FtsE; Identified by similarity to SP:P10115; match to protein family HMM PF00005. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.436 |
| phaA | SPO1424 | SPO2893 | SPO1424 | pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039. | Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.715 |
| phaA | trkA | SPO2893 | SPO2083 | pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039. | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.492 |
| phaA | trkH-1 | SPO2893 | SPO1353 | pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.441 |
| trkA | SPO1424 | SPO2083 | SPO1424 | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.683 |
| trkA | dinF | SPO2083 | SPO2909 | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | Identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.414 |
| trkA | phaA | SPO2083 | SPO2893 | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039. | 0.492 |
| trkA | trkH-1 | SPO2083 | SPO1353 | Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254. | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.960 |
| trkH-1 | SPO1352a | SPO1353 | SPO1352a | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG003; not identified in other Roseobacter strains'. | 0.608 |
| trkH-1 | SPO1424 | SPO1353 | SPO1424 | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.485 |
| trkH-1 | dinF | SPO1353 | SPO2909 | Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.422 |
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