STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1354Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471. (639 aa)    
Predicted Functional Partners:
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
 
     0.878
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.772
glyQ
glycyl-tRNA synthetase, alpha subunit; Identified by similarity to SP:P00960; match to protein family HMM PF02091; match to protein family HMM TIGR00388.
       0.739
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.738
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.731
SPO1032
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.718
SPO0304
Lipoprotein, putative.
  
     0.716
SPO1024
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
SPO2738
Lipoprotein, putative.
 
     0.692
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.686
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.