Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1381Hypothetical protein; Identified by similarity to PIR:E98182. (158 aa)    
Predicted Functional Partners:
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.769
ctaD
Cytochrome c oxidase, aa3-type, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
      0.757
SPO1380
Hypothetical protein; Identified by similarity to GB:BAB50627.1.
       0.746
SPO1180
Hypothetical protein; Identified by similarity to GB:BAB48908.1.
  
     0.664
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.656
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.647
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.633
SPO3072
SURF1 family protein.
 
    0.630
SPO0933
Hypothetical protein; Identified by similarity to GB:BAB48740.1.
  
     0.626
SPO3627
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.622
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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