STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1385Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409. (382 aa)    
Predicted Functional Partners:
SPO1384
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
    0.950
SPO3545
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
   
 0.614
SPO1386
HIT family protein; Identified by match to protein family HMM PF01230.
  
   0.542
SPO0110
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
  
  
 0.490
SPO1284
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF05146.
 
     0.471
SPO2584
Identified by match to protein family HMM PF00903.
 
    0.431
ctaD
Cytochrome c oxidase, aa3-type, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
       0.427
SPO0068
Transcriptional regulator, putative.
 
    0.418
SPO1387
Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
  
 0.411
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
     
 0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.