SPO1386 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO1386

HIT family protein; Identified by match to protein family HMM PF01230. (138 aa)

Predicted Functional Partners:

SPO1387

0.618

SPO1081

0.611

SPO1385

0.535

SPO1384

0.482

cobB-2

0.469

hisS

0.455

SPO3421

0.426

pheT

0.420

tatA

0.410

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1081	SPO1386	SPO1081	SPO1386	Hypothetical protein; Identified by similarity to GB:AAM82654.1.	HIT family protein; Identified by match to protein family HMM PF01230.	0.611
SPO1384	SPO1385	SPO1384	SPO1385	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	0.949
SPO1384	SPO1386	SPO1384	SPO1386	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	HIT family protein; Identified by match to protein family HMM PF01230.	0.482
SPO1384	SPO1387	SPO1384	SPO1387	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.	0.415
SPO1385	SPO1384	SPO1385	SPO1384	Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.949
SPO1385	SPO1386	SPO1385	SPO1386	Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	HIT family protein; Identified by match to protein family HMM PF01230.	0.535
SPO1386	SPO1081	SPO1386	SPO1081	HIT family protein; Identified by match to protein family HMM PF01230.	Hypothetical protein; Identified by similarity to GB:AAM82654.1.	0.611
SPO1386	SPO1384	SPO1386	SPO1384	HIT family protein; Identified by match to protein family HMM PF01230.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.482
SPO1386	SPO1385	SPO1386	SPO1385	HIT family protein; Identified by match to protein family HMM PF01230.	Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	0.535
SPO1386	SPO1387	SPO1386	SPO1387	HIT family protein; Identified by match to protein family HMM PF01230.	Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.	0.618
SPO1386	SPO3421	SPO1386	SPO3421	HIT family protein; Identified by match to protein family HMM PF01230.	Hypothetical protein; Identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; Belongs to the UPF0434 family.	0.426
SPO1386	cobB-2	SPO1386	SPO0978	HIT family protein; Identified by match to protein family HMM PF01230.	CobB; Identified by similarity to GB:AAC78722.1; match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.	0.469
SPO1386	hisS	SPO1386	SPO0667	HIT family protein; Identified by match to protein family HMM PF01230.	histidyl-tRNA synthetase.	0.455
SPO1386	pheT	SPO1386	SPO3489	HIT family protein; Identified by match to protein family HMM PF01230.	phenylalanyl-tRNA synthetase, beta subunit; Identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.420
SPO1386	tatA	SPO1386	SPO2683	HIT family protein; Identified by match to protein family HMM PF01230.	Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.410
SPO1387	SPO1384	SPO1387	SPO1384	Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.415
SPO1387	SPO1386	SPO1387	SPO1386	Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.	HIT family protein; Identified by match to protein family HMM PF01230.	0.618
SPO3421	SPO1386	SPO3421	SPO1386	Hypothetical protein; Identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; Belongs to the UPF0434 family.	HIT family protein; Identified by match to protein family HMM PF01230.	0.426
cobB-2	SPO1386	SPO0978	SPO1386	CobB; Identified by similarity to GB:AAC78722.1; match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.	HIT family protein; Identified by match to protein family HMM PF01230.	0.469
hisS	SPO1386	SPO0667	SPO1386	histidyl-tRNA synthetase.	HIT family protein; Identified by match to protein family HMM PF01230.	0.455

page 1 of 2

Server load: medium (60%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About