STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1387Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297. (320 aa)    
Predicted Functional Partners:
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.703
SPO1386
HIT family protein; Identified by match to protein family HMM PF01230.
    
 0.618
SPO2877
Hypothetical protein; Identified by similarity to PIR:T36736.
  
 0.511
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
  
 
 0.504
SPO2952
trkA domain protein; Identified by match to protein family HMM PF02080.
  
 
 0.504
SPO3520
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.451
SPO3877
Transcriptional regulator/arsenate reductase; Identified by similarity to GB:AAF69239.1; match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
   
 0.445
SPO1388
Transcriptional regulator, LuxR family/hydrolase, alpha/beta fold family; Identified by similarity to GB:BAC51348.1; match to protein family HMM PF00196; match to protein family HMM PF00561.
       0.429
SPO1361
Multicopper oxidase domain protein; Identified by match to protein family HMM PF00394.
 
  
 0.425
SPO1384
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
  
 0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (70%) [HD]