STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1404Membrane protein, putative; Identified by similarity to GB:BAB53930.1. (408 aa)    
Predicted Functional Partners:
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.567
SPO1657
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
    0.494
SPO1658
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
  
     0.429
SPO2112
Transmembrane drug/metabolite transporter family protein; Identified by match to protein family HMM PF00892.
  
     0.420
SPO3047
Dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
  
     0.419
SPO1747
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
  
     0.409
SPO3048
Dipeptide ABC transporter, permease protein; Assignment partly based on membership in dipeptide ABC transporter gene cluster; identified by match to protein family HMM PF00528.
  
     0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.