STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1407Hypothetical protein; Identified by similarity to GB:BAD02216.1. (100 aa)    
Predicted Functional Partners:
rluD
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.745
SPO0418
Membrane protein, putative; Identified by similarity to GB:CAE53834.1.
  
     0.678
SPO2968
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.548
SPO1106
Hypothetical protein; Identified by similarity to PIR:B75327.
  
     0.543
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.523
SPO3884
Smr domain protein; Identified by similarity to GB:AAM48726.1; match to protein family HMM PF01713.
  
     0.505
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.491
SPO1097
Hypothetical protein; Identified by similarity to PIR:C98286.
  
     0.478
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.468
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.447
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.