Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1415Identified by match to protein family HMM PF02036. (96 aa)    
Predicted Functional Partners:
SPO1414
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
       0.836
SPO1416
TPR domain protein; Identified by match to protein family HMM PF00515.
       0.690
SPO1418
S4 domain protein; Identified by match to protein family HMM PF01479.
       0.641
pepF
Identified by match to protein family HMM PF01432.
       0.583
SPO1417
Helicase, putative; Identified by match to protein family HMM PF00271.
       0.523
SPO1419
Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.484
SPO1447
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796.
   
   0.483
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.468
SPO2239
Hypothetical protein; Identified by similarity to GB:AAN30050.1.
  
     0.427
SPO2517
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
  
     0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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