SPO1418 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1418

S4 domain protein; Identified by match to protein family HMM PF01479. (100 aa)

Predicted Functional Partners:

rplS

0.874

hslO

0.863

SPO1417

0.853

rpmB

0.831

rpoC

0.831

rpmD

0.828

rplQ

0.828

rpmG

0.824

rplX

0.822

rpmH

0.815

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1417	SPO1418	SPO1417	SPO1418	Helicase, putative; Identified by match to protein family HMM PF00271.	S4 domain protein; Identified by match to protein family HMM PF01479.	0.853
SPO1418	SPO1417	SPO1418	SPO1417	S4 domain protein; Identified by match to protein family HMM PF01479.	Helicase, putative; Identified by match to protein family HMM PF00271.	0.853
SPO1418	hslO	SPO1418	SPO0024	S4 domain protein; Identified by match to protein family HMM PF01479.	Chaperonin, 33 kDa; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	0.863
SPO1418	rplQ	SPO1418	SPO0512	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L17; Identified by similarity to SP:P02416.	0.828
SPO1418	rplS	SPO1418	SPO3257	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.874
SPO1418	rplX	SPO1418	SPO0496	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.822
SPO1418	rpmB	SPO1418	SPO0974	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.831
SPO1418	rpmD	SPO1418	SPO0503	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L30; Identified by similarity to SP:Q9Z9J6.	0.828
SPO1418	rpmG	SPO1418	SPO2965	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L33; Identified by similarity to SP:P02436; Belongs to the bacterial ribosomal protein bL33 family.	0.824
SPO1418	rpmH	SPO1418	SPO0538	S4 domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.815
SPO1418	rpoC	SPO1418	SPO3507	S4 domain protein; Identified by match to protein family HMM PF01479.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.831
hslO	SPO1418	SPO0024	SPO1418	Chaperonin, 33 kDa; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	S4 domain protein; Identified by match to protein family HMM PF01479.	0.863
rplQ	SPO1418	SPO0512	SPO1418	Ribosomal protein L17; Identified by similarity to SP:P02416.	S4 domain protein; Identified by match to protein family HMM PF01479.	0.828
rplQ	rplS	SPO0512	SPO3257	Ribosomal protein L17; Identified by similarity to SP:P02416.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.986
rplQ	rplX	SPO0512	SPO0496	Ribosomal protein L17; Identified by similarity to SP:P02416.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.987
rplQ	rpmB	SPO0512	SPO0974	Ribosomal protein L17; Identified by similarity to SP:P02416.	Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.976
rplQ	rpmD	SPO0512	SPO0503	Ribosomal protein L17; Identified by similarity to SP:P02416.	Ribosomal protein L30; Identified by similarity to SP:Q9Z9J6.	0.980
rplQ	rpmG	SPO0512	SPO2965	Ribosomal protein L17; Identified by similarity to SP:P02416.	Ribosomal protein L33; Identified by similarity to SP:P02436; Belongs to the bacterial ribosomal protein bL33 family.	0.974
rplQ	rpmH	SPO0512	SPO0538	Ribosomal protein L17; Identified by similarity to SP:P02416.	Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.964
rplQ	rpoC	SPO0512	SPO3507	Ribosomal protein L17; Identified by similarity to SP:P02416.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About