Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1435Identified by match to protein family HMM PF05853. (301 aa)    
Predicted Functional Partners:
lcdH
3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.917
SPO2705
Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
  
 0.801
SPO0836
Hypothetical protein; Identified by similarity to GB:BAB48851.1.
 
  
 0.765
SPO1434
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
     0.591
linC-1
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by similarity to SP:P50197; match to protein family HMM PF00106.
  
    0.546
SPO0835
Cyclase, putative; Identified by similarity to GB:AAC38443.1; match to protein family HMM PF04199.
  
  
 0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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