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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdH3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (487 aa)    
Predicted Functional Partners:
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 
 0.915
SPO1435
Identified by match to protein family HMM PF05853.
 
  
 0.912
linC-1
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by similarity to SP:P50197; match to protein family HMM PF00106.
 
 
 0.846
SPO2703
Hypothetical protein; Identified by similarity to PIR:G82972; match to protein family HMM PF05853.
 
  
 0.791
SPO0836
Hypothetical protein; Identified by similarity to GB:BAB48851.1.
 
   
 0.694
SPO0316
Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.678
SPO2698
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.628
SPO3380
Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.
 
  
 0.612
fadH
2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724.
  
  
 0.588
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 
 
0.564
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.